منابع مشابه
Control Flow Analysis for BioAmbients
This paper presents a static analysis for investigating properties of biological systems specified in BioAmbients. We exploit the control flow analysis to decode the bindings of variables induced by communications and to build a relation of the ambients that can interact with each other. We eventually apply our analysis to an example of gene regulation by positive feedback taken from the litera...
متن کاملStatic Analysis for Biological Systems (BioAmbients)
In this paper, I present a summary on some works that utilized static analysis techniques for understanding biological systems. Control flow analysis, context dependent analysis, and other techniques were employed to investigate the properties of BioAmbients. In this summary report, I tried to introduce the ideas and explain the techniques used in the subject papers. This summary will highlight...
متن کاملSpatial Analysis of BioAmbients
Programming language technology can contribute to the development and understanding of Systems Biology by providing formal calculi for specifying and analysing the dynamic behaviour of biological systems. Our focus is on BioAmbients, a variation of the ambient calculi developed for modelling mobility in computer systems. We present a static analysis for capturing the spatial structure of biolog...
متن کاملContext Dependent Analysis of BioAmbients
BioAmbients is a derivative of mobile ambients that has shown promise of describing interesting features of the behaviour of biological systems. The technical contribution of this paper is to extend the Flow Logic approach to static analysis with a couple of new techniques in order to give precise information about the behaviour of systems written in BioAmbients. Applying the development to a s...
متن کاملA Stochastic Semantics for BioAmbients
We consider BioAmbients, a calculus for specifying biological entities and for simulating and analysing their behaviour. We extend BioAmbients to take quantitative information into account by defining a stochastic semantics, based on a simulation stochastic algorithm, to determine the actual rate of transitions.
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ژورنال
عنوان ژورنال: The Journal of Logic and Algebraic Programming
سال: 2008
ISSN: 1567-8326
DOI: 10.1016/j.jlap.2008.05.006